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smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106583296, updated on 13-Mar-2024

Summary

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Gene symbol
smug1
Gene description
single-strand-selective monofunctional uracil-DNA glycosylase 1
See related
Ensembl:ENSSSAG00000087500
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: ssa22
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa22 NC_059463.1 (33587928..33590818, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa22 NC_027321.1 (32764367..32767206, complement)

Chromosome ssa22 - NC_059463.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106583297 Neighboring gene homeobox protein HoxC4bb Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene heterogeneous nuclear ribonucleoprotein A2 homolog 1 Neighboring gene gastrula zinc finger protein XlCGF58.1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-strand selective uracil DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-strand-selective monofunctional uracil-DNA glycosylase 1
Names
single-strand selective monofunctional uracil

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059463.1 Reference Ssal_v3.1

    Range
    33587928..33590818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014167335.2 → XP_014022810.1  single-strand-selective monofunctional uracil-DNA glycosylase 1

    UniProtKB/TrEMBL
    A0A1S3P5C7, B3TDI7
    Related
    ENSSSAP00000122362.1, ENSSSAT00000177938.1
    Conserved Domains (1) summary
    cl00483
    Location:58 → 289
    UDG_like; Uracil-DNA glycosylases (UDG) and related enzymes
Nucleotide Protein
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