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LOC106579731 retinol dehydrogenase 10 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106579731, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106579731
Gene description
retinol dehydrogenase 10
See related
Ensembl:ENSSSAG00000091114
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
rdh10
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Genomic context

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Location:
chromosome: ssa19
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa19 NC_059460.1 (83638844..83661070)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa19 NC_027318.1 (79456073..79475233)

Chromosome ssa19 - NC_059460.1Genomic Context describing neighboring genes Neighboring gene small nucleolar SNORD12/SNORD106 Neighboring gene small nucleolar SNORD12/SNORD106 Neighboring gene ribosomal protein L7 Neighboring gene staufen double-stranded RNA binding protein 2 Neighboring gene ubiquitin conjugating enzyme E2 W

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinol dehydrogenase 10-A
Names
retinol dehydrogenase 10 (all-trans)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059460.1 Reference Ssal_v3.1

    Range
    83638844..83661070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014159895.2 → XP_014015370.1  retinol dehydrogenase 10-A

    UniProtKB/TrEMBL
    A0A1S3NJD7
    Related
    ENSSSAP00000145486.1, ENSSSAT00000189980.1
    Conserved Domains (2) summary
    cd05339
    Location:42 → 311
    17beta-HSDXI-like_SDR_c; human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs
    pfam00106
    Location:41 → 256
    adh_short; short chain dehydrogenase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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