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LOC106566563 SAM domain and HD domain 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106566563, updated on 3-Apr-2024

Summary

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Gene symbol
LOC106566563
Gene description
SAM domain and HD domain 1
See related
Ensembl:ENSSSAG00000090850
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
samhd1
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Genomic context

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See LOC106566563 in Genome Data Viewer
Location:
chromosome: ssa13
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa13 NC_059454.1 (17336626..17353968)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa13 NC_027312.1 (13290343..13307745)

Chromosome ssa13 - NC_059454.1Genomic Context describing neighboring genes Neighboring gene NUAK family SNF1-like kinase 1 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene snail family zinc finger 1b Neighboring gene transfer RNA alanine (anticodon UGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dGTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dGTP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Names
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059454.1 Reference Ssal_v3.1

    Range
    17336626..17353968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014134687.2 → XP_013990162.2  deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X2

  2. XM_014134686.2 → XP_013990161.1  deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1

    UniProtKB/TrEMBL
    A0A1S3LGT9, A0A1S3LGU2
    Related
    ENSSSAP00000178909.1, ENSSSAT00000198757.1
    Conserved Domains (4) summary
    smart00454
    Location:38 → 99
    SAM; Sterile alpha motif
    smart00471
    Location:152 → 249
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
    COG1078
    Location:108 → 452
    YdhJ; HD superfamily phosphohydrolase [General function prediction only]
    cl15755
    Location:35 → 101
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
Heading Accession and Version

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