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rad54l2 RAD54 like 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106565170, updated on 13-Mar-2024

Summary

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Gene symbol
rad54l2
Gene description
RAD54 like 2
See related
Ensembl:ENSSSAG00000041460
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: ssa12
Exon count:
24
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa12 NC_059453.1 (51893753..51932550, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa12 NC_027311.1 (44381448..44417774, complement)

Chromosome ssa12 - NC_059453.1Genomic Context describing neighboring genes Neighboring gene transmembrane reductase CYB561D2 Neighboring gene Ras association domain family member 1 Neighboring gene protein bassoon-like Neighboring gene BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) Neighboring gene uncharacterized LOC123725648

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase ARIP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059453.1 Reference Ssal_v3.1

    Range
    51893753..51932550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014132005.2 → XP_013987480.1  helicase ARIP4

    UniProtKB/TrEMBL
    A0A1S3L943
    Related
    ENSSSAP00000166145.1, ENSSSAT00000172989.1
    Conserved Domains (3) summary
    cd00046
    Location:385 → 577
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:359 → 713
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:798 → 934
    Helicase_C; Helicase conserved C-terminal domain

  2. XM_014132006.2 → XP_013987481.1  helicase ARIP4

    UniProtKB/TrEMBL
    A0A1S3L943
    Conserved Domains (3) summary
    cd00046
    Location:385 → 577
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:359 → 713
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:798 → 934
    Helicase_C; Helicase conserved C-terminal domain

  3. XM_014132007.2 → XP_013987482.1  helicase ARIP4

    UniProtKB/TrEMBL
    A0A1S3L943
    Conserved Domains (3) summary
    cd00046
    Location:385 → 577
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:359 → 713
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:798 → 934
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version

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