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cwc27 CWC27 spliceosome associated cyclophilin [ Salmo salar (Atlantic salmon) ]

Gene ID: 106562211, updated on 13-Mar-2024

Summary

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Gene symbol
cwc27
Gene description
CWC27 spliceosome associated cyclophilin
See related
Ensembl:ENSSSAG00000074266
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: ssa01
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa01 NC_059442.1 (129110812..129165788)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa01 NC_027300.1 (114231501..114283424)

Chromosome ssa01 - NC_059442.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase domain and WD repeat-containing protein 1-like Neighboring gene SREK1-interacting protein 1 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 6 Neighboring gene placenta associated 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spliceosome-associated protein CWC27 homolog
Names
CWC27 spliceosome associated protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059442.1 Reference Ssal_v3.1

    Range
    129110812..129165788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014126933.2 → XP_013982408.1  spliceosome-associated protein CWC27 homolog isoform X2

    UniProtKB/TrEMBL
    A0A1S3KUQ1
    Conserved Domains (1) summary
    cd01925
    Location:10 → 173
    cyclophilin_CeCYP16-like; cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced ...

  2. XM_014126923.2 → XP_013982398.1  spliceosome-associated protein CWC27 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1S3KUP1
    Related
    ENSSSAP00000099708.2, ENSSSAT00000134190.2
    Conserved Domains (2) summary
    COG1196
    Location:283 → 408
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd01925
    Location:8 → 178
    cyclophilin_CeCYP16-like; cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase ...
Nucleotide Protein
Heading Accession and Version

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