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NPLOC4 NPL4 homolog, ubiquitin recognition factor [ Thamnophis sirtalis ]

Gene ID: 106553878, updated on 13-Mar-2024

Summary

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Gene symbol
NPLOC4
Gene description
NPL4 homolog, ubiquitin recognition factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013660125.1 (55335..104465, complement)

NW_013660125.1Genomic Context describing neighboring genes Neighboring gene fascin-2-like Neighboring gene FA core complex associated protein 100

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013660125.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear protein localization protein 4 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013660125.1 Reference Thamnophis_sirtalis-6.0

    Range
    55335..104465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014072460.1 → XP_013927935.1  nuclear protein localization protein 4 homolog

    UniProtKB/TrEMBL
    A0A6I9YWF7
    Conserved Domains (5) summary
    smart00547
    Location:585 → 607
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:585 → 604
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam05020
    Location:106 → 246
    zf-NPL4; NPL4 family, putative zinc binding region
    pfam05021
    Location:250 → 557
    NPL4; NPL4 family
    pfam11543
    Location:6 → 79
    UN_NPL4; Nuclear pore localization protein NPL4
Nucleotide Protein
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