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EEFSEC eukaryotic elongation factor, selenocysteine-tRNA specific [ Thamnophis sirtalis ]

Gene ID: 106547011, updated on 13-Mar-2024

Summary

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Gene symbol
EEFSEC
Gene description
eukaryotic elongation factor, selenocysteine-tRNA specific
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013658622.1 (85346..275257)

NW_013658622.1Genomic Context describing neighboring genes Neighboring gene SEC61 translocon subunit alpha 1 Neighboring gene RuvB like AAA ATPase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013658622.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
selenocysteine-specific elongation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013658622.1 Reference Thamnophis_sirtalis-6.0

    Range
    85346..275257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014064032.1 → XP_013919507.1  selenocysteine-specific elongation factor isoform X2

    UniProtKB/TrEMBL
    A0A6I9XYY5
    Conserved Domains (4) summary
    cd01889
    Location:21 → 218
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    pfam00009
    Location:21 → 215
    GTP_EFTU; Elongation factor Tu GTP binding domain
    cd03696
    Location:222 → 304
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:309 → 443
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB

  2. XM_014064031.1 → XP_013919506.1  selenocysteine-specific elongation factor isoform X1

    UniProtKB/TrEMBL
    A0A6I9XZW1
    Conserved Domains (4) summary
    cd01889
    Location:21 → 209
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    pfam00009
    Location:21 → 215
    GTP_EFTU; Elongation factor Tu GTP binding domain
    cd03696
    Location:222 → 304
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:309 → 443
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
Nucleotide Protein
Heading Accession and Version

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