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FANCM FA complementation group M [ Thamnophis sirtalis ]

Gene ID: 106543839, updated on 13-Mar-2024

Summary

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Gene symbol
FANCM
Gene description
FA complementation group M
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013658256.1 (853401..905704, complement)

NW_013658256.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine kinase 7 (inactive) Neighboring gene MIS18 binding protein 1 Neighboring gene FKBP prolyl isomerase 3 Neighboring gene pre-mRNA processing factor 39

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013658256.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via synthesis-dependent strand annealing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork reversal IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Fanconi anemia group M protein
Names
Fanconi anemia complementation group M

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013658256.1 Reference Thamnophis_sirtalis-6.0

    Range
    853401..905704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014059930.1 → XP_013915405.1  Fanconi anemia group M protein

    UniProtKB/TrEMBL
    A0A6I9Y7L9
    Conserved Domains (6) summary
    smart00891
    Location:1484 → 1564
    ERCC4; ERCC4 domain
    COG1948
    Location:1485 → 1691
    MUS81; ERCC4-type nuclease [Replication, recombination and repair]
    cd12091
    Location:16 → 125
    FANCM_ID; Insert domain of FANCM and related proteins
    pfam00271
    Location:189 → 292
    Helicase_C; Helicase conserved C-terminal domain
    pfam09444
    Location:1195 → 1253
    MRC1; MRC1-like domain
    pfam16783
    Location:394 → 507
    FANCM-MHF_bd; FANCM to MHF binding domain
Nucleotide Protein
Heading Accession and Version

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