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LCMT2 leucine carboxyl methyltransferase 2 [ Thamnophis sirtalis ]

Gene ID: 106541889, updated on 13-Mar-2024

Summary

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Gene symbol
LCMT2
Gene description
leucine carboxyl methyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
Orthologs
human mouse all
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Genomic context

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See LCMT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013658077.1 (172577..190676, complement)

NW_013658077.1Genomic Context describing neighboring genes Neighboring gene tripeptidyl-peptidase 1-like Neighboring gene dachsous cadherin-related 1 Neighboring gene uncharacterized LOC106541896 Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013658077.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wybutosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA wybutosine-synthesizing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013658077.1 Reference Thamnophis_sirtalis-6.0

    Range
    172577..190676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014057450.1 → XP_013912925.1  tRNA wybutosine-synthesizing protein 4

    UniProtKB/TrEMBL
    A0A6I9Y586
    Conserved Domains (3) summary
    sd00038
    Location:333 → 384
    Kelch; KELCH repeat [structural motif]
    pfam00046
    Location:14 → 51
    Homeobox; Homeobox domain
    cl17173
    Location:93 → 147
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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