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rrp36 ribosomal RNA processing 36 [ Austrofundulus limnaeus ]

Gene ID: 106533571, updated on 13-Mar-2024

Summary

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Gene symbol
rrp36
Gene description
ribosomal RNA processing 36
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See rrp36 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013953377.1 (52448..80265)

NW_013953377.1Genomic Context describing neighboring genes Neighboring gene apoptosis-stimulating of p53 protein 2-like Neighboring gene lysine-specific demethylase 2A pseudogene Neighboring gene lysine-specific demethylase 2A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013953377.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA processing protein 36 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013953377.1 Reference Austrofundulus_limnaeus-1.0

    Range
    52448..80265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014029925.1 → XP_013885379.1  ribosomal RNA processing protein 36 homolog

    UniProtKB/TrEMBL
    A0A2I4CZG9
    Conserved Domains (1) summary
    pfam06102
    Location:163 → 321
    DUF947; Domain of unknown function (DUF947)
Nucleotide Protein
Heading Accession and Version

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