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fxr2 FMR1 autosomal homolog 2 [ Austrofundulus limnaeus ]

Gene ID: 106527920, updated on 13-Mar-2024

Summary

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Gene symbol
fxr2
Gene description
FMR1 autosomal homolog 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952752.1 (460779..483840)

NW_013952752.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106527927 Neighboring gene dedicator of cytokinesis 11 Neighboring gene HAUS augmin-like complex, subunit 4 Neighboring gene RNA-binding protein 4B-like Neighboring gene RNA-binding protein 4B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952752.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterograde axonal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dendritic spine development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of filopodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of modification of synaptic structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of translation at postsynapse, modulating synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic filopodium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine neck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in growth cone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fragile X mental retardation syndrome-related protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952752.1 Reference Austrofundulus_limnaeus-1.0

    Range
    460779..483840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014022936.1 → XP_013878390.1  fragile X mental retardation syndrome-related protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2I4CEH0
    Conserved Domains (5) summary
    smart00322
    Location:219 → 280
    KH; K homology RNA-binding domain
    cd00105
    Location:286 → 368
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:62 → 120
    Agenet; Agenet domain
    pfam12235
    Location:370 → 467
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal
    pfam16096
    Location:508 → 578
    FXR_C1; Fragile X-related 1 protein C-terminal region 2

  2. XM_014022937.1 → XP_013878391.1  fragile X mental retardation syndrome-related protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A2I4CEH4
    Conserved Domains (5) summary
    smart00322
    Location:219 → 280
    KH; K homology RNA-binding domain
    cd00105
    Location:286 → 368
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:62 → 120
    Agenet; Agenet domain
    pfam12235
    Location:370 → 462
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal
    pfam16096
    Location:503 → 573
    FXR_C1; Fragile X-related 1 protein C-terminal region 2

  3. XM_014022938.1 → XP_013878392.1  fragile X mental retardation syndrome-related protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A2I4CEH6
    Conserved Domains (5) summary
    smart00322
    Location:219 → 280
    KH; K homology RNA-binding domain
    cd00105
    Location:286 → 352
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:62 → 120
    Agenet; Agenet domain
    pfam12235
    Location:354 → 451
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal
    pfam16096
    Location:492 → 562
    FXR_C1; Fragile X-related 1 protein C-terminal region 2

  4. XM_014022939.1 → XP_013878393.1  fragile X mental retardation syndrome-related protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A2I4CEI7
    Conserved Domains (5) summary
    smart00322
    Location:219 → 280
    KH; K homology RNA-binding domain
    cd00105
    Location:286 → 352
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam05641
    Location:62 → 120
    Agenet; Agenet domain
    pfam12235
    Location:354 → 446
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal
    pfam16096
    Location:487 → 557
    FXR_C1; Fragile X-related 1 protein C-terminal region 2
Nucleotide Protein
Heading Accession and Version

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