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hps6 HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 [ Austrofundulus limnaeus ]

Gene ID: 106526305, updated on 13-Mar-2024

Summary

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Gene symbol
hps6
Gene description
HPS6 biogenesis of lysosomal organelles complex 2 subunit 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952402.1 (3867565..3873021, complement)

NW_013952402.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106526204 Neighboring gene LIM domain binding 1a Neighboring gene prominin 2 Neighboring gene Kv channel-interacting protein 2-like Neighboring gene cytochrome c oxidase assembly protein COX15 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952402.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lysosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in melanocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BLOC-2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Hermansky-Pudlak syndrome 6 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952402.1 Reference Austrofundulus_limnaeus-1.0

    Range
    3867565..3873021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014020922.1 → XP_013876376.1  Hermansky-Pudlak syndrome 6 protein

    UniProtKB/TrEMBL
    A0A2I4C8R2
    Conserved Domains (1) summary
    pfam15702
    Location:1 → 863
    HPS6; Hermansky-Pudlak syndrome 6 protein
Nucleotide Protein
Heading Accession and Version

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