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rbm20 RNA binding motif protein 20 [ Austrofundulus limnaeus ]

Gene ID: 106521085, updated on 13-Mar-2024

Summary

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Gene symbol
rbm20
Gene description
RNA binding motif protein 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952504.1 (766235..790866)

NW_013952504.1Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 5 Neighboring gene structural maintenance of chromosomes 3 Neighboring gene programmed cell death 4b Neighboring gene SHOC2 leucine rich repeat scaffold protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952504.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952504.1 Reference Austrofundulus_limnaeus-1.0

    Range
    766235..790866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014013500.1 → XP_013868954.1  RNA-binding protein 20

    UniProtKB/TrEMBL
    A0A2I4BMJ2
    Conserved Domains (2) summary
    smart00451
    Location:1032 → 1065
    ZnF_U1; U1-like zinc finger
    cd12685
    Location:443 → 518
    RRM_RBM20; RNA recognition motif of vertebrate RNA-binding protein 20 (RBM20)
Nucleotide Protein
Heading Accession and Version

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