U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106520965 collectin subfamily member 12 [ Austrofundulus limnaeus ]

Gene ID: 106520965, updated on 2-Sep-2022

Summary

Go to the top of the page Help
Gene symbol
LOC106520965
Gene description
collectin subfamily member 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Also known as
colec12
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952502.1 (221692..254072)

NW_013952502.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein kinase yes-like Neighboring gene enolase superfamily member 1 Neighboring gene thymidylate synthetase Neighboring gene 3-hydroxyacyl-CoA dehydratase 1 Neighboring gene transmembrane protein 236

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_013952502.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
collectin-12

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952502.1 Reference Austrofundulus_limnaeus-1.0

    Range
    221692..254072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014013305.1 → XP_013868759.1  collectin-12 isoform X2

    UniProtKB/TrEMBL
    A0A2I4BLZ6
    Conserved Domains (3) summary
    cd03590
    Location:564 → 689
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam01391
    Location:482 → 512
    Collagen; Collagen triple helix repeat (20 copies)
    cl00788
    Location:144 → 211
    MttA_Hcf106; mttA/Hcf106 family

  2. XM_014013304.1 → XP_013868758.1  collectin-12 isoform X1

    UniProtKB/TrEMBL
    A0A2I4BM05
    Conserved Domains (3) summary
    cd03590
    Location:605 → 730
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam01391
    Location:523 → 553
    Collagen; Collagen triple helix repeat (20 copies)
    cl00788
    Location:185 → 252
    MttA_Hcf106; mttA/Hcf106 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.