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prpf18 PRP18 pre-mRNA processing factor 18 homolog (yeast) [ Austrofundulus limnaeus ]

Gene ID: 106520308, updated on 13-Mar-2024

Summary

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Gene symbol
prpf18
Gene description
PRP18 pre-mRNA processing factor 18 homolog (yeast)
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952492.1 (657106..662687, complement)

NW_013952492.1Genomic Context describing neighboring genes Neighboring gene WW domain containing oxidoreductase Neighboring gene transcription factor Maf-like Neighboring gene uncharacterized LOC106520306 Neighboring gene zona pellucida sperm-binding protein 4-like Neighboring gene choline kinase beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952492.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18
Names
pre-mRNA processing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952492.1 Reference Austrofundulus_limnaeus-1.0

    Range
    657106..662687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014012307.1 → XP_013867761.1  pre-mRNA-splicing factor 18

    UniProtKB/TrEMBL
    A0A2I4BJ53
    Conserved Domains (2) summary
    smart00500
    Location:78 → 121
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:190 → 327
    Prp18; Prp18 domain
Nucleotide Protein
Heading Accession and Version

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