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bhlhe40 basic helix-loop-helix family member e40 [ Austrofundulus limnaeus ]

Gene ID: 106518057, updated on 19-Oct-2023

Summary

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Gene symbol
bhlhe40
Gene description
basic helix-loop-helix family member e40
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952457.1 (1689469..1693059, complement)

NW_013952457.1Genomic Context describing neighboring genes Neighboring gene putative fidgetin-like protein 2 Neighboring gene solute carrier family 4 member 8 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1-like Neighboring gene sulfatase modifying factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952457.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
class E basic helix-loop-helix protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952457.1 Reference Austrofundulus_limnaeus-1.0

    Range
    1689469..1693059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014009151.1 → XP_013864605.1  class E basic helix-loop-helix protein 40

    UniProtKB/TrEMBL
    A0A2I4BA46
    Conserved Domains (2) summary
    cd00083
    Location:49 → 107
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:136 → 174
    Hairy_orange; Hairy Orange
Nucleotide Protein
Heading Accession and Version

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