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cdh18 cadherin 18 [ Austrofundulus limnaeus ]

Gene ID: 106515521, updated on 13-Mar-2024

Summary

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Gene symbol
cdh18
Gene description
cadherin 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952432.1 (189733..335031)

NW_013952432.1Genomic Context describing neighboring genes Neighboring gene cadherin-12-like Neighboring gene uncharacterized LOC106515522 Neighboring gene collagen alpha-1(XV) chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952432.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952432.1 Reference Austrofundulus_limnaeus-1.0

    Range
    189733..335031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014005361.1 → XP_013860815.1  cadherin-18

    UniProtKB/TrEMBL
    A0A2I4AZ90
    Conserved Domains (4) summary
    cd11304
    Location:389 → 485
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:80 → 158
    CA; Cadherin repeats
    pfam00028
    Location:497 → 590
    Cadherin; Cadherin domain
    pfam01049
    Location:649 → 787
    Cadherin_C; Cadherin cytoplasmic region
Nucleotide Protein
Heading Accession and Version

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