U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [ Austrofundulus limnaeus ]

Gene ID: 106514863, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sepsecs
Gene description
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952425.1 (2547949..2563520, complement)

NW_013952425.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase/endoribonuclease IRE1-like Neighboring gene leucine-rich repeat LGI family, member 2a Neighboring gene DENN/MADD domain containing 4C Neighboring gene cell division cycle associated 9 Neighboring gene perilipin 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_013952425.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-phosphoseryl-tRNA(Sec) selenium transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in conversion of seryl-tRNAsec to selenocys-tRNAsec IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
O-phosphoseryl-tRNA(Sec) selenium transferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952425.1 Reference Austrofundulus_limnaeus-1.0

    Range
    2547949..2563520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014004383.1 → XP_013859837.1  O-phosphoseryl-tRNA(Sec) selenium transferase

    UniProtKB/TrEMBL
    A0A2I4AWH8
    Conserved Domains (1) summary
    TIGR03531
    Location:13 → 458
    selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase

  2. XM_014004384.1 → XP_013859838.1  O-phosphoseryl-tRNA(Sec) selenium transferase

    UniProtKB/TrEMBL
    A0A2I4AWH8
    Conserved Domains (1) summary
    TIGR03531
    Location:13 → 458
    selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.