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pir pirin [ Austrofundulus limnaeus ]

Gene ID: 106513925, updated on 13-Mar-2024

Summary

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Gene symbol
pir
Gene description
pirin
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See pir in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952418.1 (4362..11313)

NW_013952418.1Genomic Context describing neighboring genes Neighboring gene glycoprotein A33 (transmembrane), paralog a Neighboring gene immunoglobulin-like domain-containing receptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952418.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables quercetin 2,3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pirin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952418.1 Reference Austrofundulus_limnaeus-1.0

    Range
    4362..11313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014002986.1 → XP_013858440.1  pirin

    UniProtKB/TrEMBL
    A0A2I4ASH4
    Conserved Domains (3) summary
    COG1741
    Location:34 → 300
    YhaK; Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]
    pfam02678
    Location:50 → 146
    Pirin; Pirin
    pfam05726
    Location:199 → 303
    Pirin_C; Pirin C-terminal cupin domain
Nucleotide Protein
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