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pitx2 paired-like homeodomain 2 [ Austrofundulus limnaeus ]

Gene ID: 106510848, updated on 13-Mar-2024

Summary

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Gene symbol
pitx2
Gene description
paired-like homeodomain 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See pitx2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013954756.1 (2906..6342, complement)

NW_013954756.1Genomic Context describing neighboring genes Neighboring gene serum response factor-like Neighboring gene protein FAM160B1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013954756.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pituitary homeobox 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013954756.1 Reference Austrofundulus_limnaeus-1.0

    Range
    2906..6342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013999574.1 → XP_013855028.1  pituitary homeobox 2

    UniProtKB/TrEMBL
    A0A2I4AHS1
    Conserved Domains (3) summary
    pfam00046
    Location:86 → 138
    Homeobox; Homeobox domain
    pfam03826
    Location:270 → 287
    OAR; OAR domain
    pfam06632
    Location:32 → 113
    XRCC4; DNA double-strand break repair and V(D)J recombination protein XRCC4
Nucleotide Protein
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