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PTBP2 polypyrimidine tract binding protein 2 [ Apteryx mantelli mantelli ]

Gene ID: 106499765, updated on 13-Mar-2024

Summary

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Gene symbol
PTBP2
Gene description
polypyrimidine tract binding protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli mantelli (sub-species: mantelli)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx; Apteryx mantelli
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current AptMant0 (GCF_001039765.1) Unplaced Scaffold NW_013988393.1 (10426655..10486205, complement)

NW_013988393.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106499673 Neighboring gene uncharacterized LOC106499674 Neighboring gene uncharacterized LOC106499692 Neighboring gene RWD domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013988393.1 Unplaced Scaffold Reference AptMant0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx australis mantelli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AptMant0

Genomic

  1. NW_013988393.1 Reference AptMant0

    Range
    10426655..10486205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013961325.1 → XP_013816779.1  polypyrimidine tract-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8B7K135
    Conserved Domains (5) summary
    cd12693
    Location:147 → 242
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12696
    Location:294 → 400
    RRM3_PTBP2; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    cd12702
    Location:421 → 500
    RRM4_PTBP2; RNA recognition motif 4 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    cd12778
    Location:27 → 108
    RRM1_PTBP2; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    TIGR01649
    Location:26 → 500
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_013961324.1 → XP_013816778.1  polypyrimidine tract-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8B7K380
    Conserved Domains (5) summary
    cd12693
    Location:147 → 242
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12696
    Location:299 → 405
    RRM3_PTBP2; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    cd12702
    Location:426 → 505
    RRM4_PTBP2; RNA recognition motif 4 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    cd12778
    Location:27 → 108
    RRM1_PTBP2; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    TIGR01649
    Location:26 → 505
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  3. XM_013961322.1 → XP_013816776.1  polypyrimidine tract-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8B7K0G9
    Conserved Domains (5) summary
    cd12693
    Location:147 → 242
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12696
    Location:299 → 405
    RRM3_PTBP2; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    cd12702
    Location:426 → 506
    RRM4_PTBP2; RNA recognition motif 4 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    cd12778
    Location:27 → 108
    RRM1_PTBP2; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    TIGR01649
    Location:26 → 506
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
Nucleotide Protein
Heading Accession and Version

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