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STN1 STN1 subunit of CST complex [ Apteryx mantelli mantelli ]

Gene ID: 106498547, updated on 13-Mar-2024

Summary

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Gene symbol
STN1
Gene description
STN1 subunit of CST complex
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli mantelli (sub-species: mantelli)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx; Apteryx mantelli
Also known as
OBFC1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current AptMant0 (GCF_001039765.1) Unplaced Scaffold NW_014006201.1 (484149..531190, complement)

NW_014006201.1Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 1 Neighboring gene SH3 and PX domains 2A Neighboring gene STE20 like kinase Neighboring gene collagen type XVII alpha 1 chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014006201.1 Unplaced Scaffold Reference AptMant0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CST complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of DNA replication factor A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chromosome, telomeric region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CST complex subunit STN1
Names
STN1, CST complex subunit
oligonucleotide/oligosaccharide binding fold containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx australis mantelli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AptMant0

Genomic

  1. NW_014006201.1 Reference AptMant0

    Range
    484149..531190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013959805.1 → XP_013815259.1  CST complex subunit STN1

    UniProtKB/TrEMBL
    A0A8B7JWA0
    Conserved Domains (3) summary
    cd04483
    Location:58 → 157
    hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
    pfam09170
    Location:159 → 328
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
    pfam10451
    Location:16 → 91
    Stn1; Telomere regulation protein Stn1

  2. XM_013959806.1 → XP_013815260.1  CST complex subunit STN1

    UniProtKB/TrEMBL
    A0A8B7JWA0
    Conserved Domains (3) summary
    cd04483
    Location:58 → 157
    hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
    pfam09170
    Location:159 → 328
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
    pfam10451
    Location:16 → 91
    Stn1; Telomere regulation protein Stn1

  3. XM_013959804.1 → XP_013815258.1  CST complex subunit STN1

    UniProtKB/TrEMBL
    A0A8B7JWA0
    Conserved Domains (3) summary
    cd04483
    Location:58 → 157
    hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
    pfam09170
    Location:159 → 328
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
    pfam10451
    Location:16 → 91
    Stn1; Telomere regulation protein Stn1

  4. XM_013959803.1 → XP_013815257.1  CST complex subunit STN1

    UniProtKB/TrEMBL
    A0A8B7JWA0
    Conserved Domains (3) summary
    cd04483
    Location:58 → 157
    hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
    pfam09170
    Location:159 → 328
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
    pfam10451
    Location:16 → 91
    Stn1; Telomere regulation protein Stn1
Nucleotide Protein
Heading Accession and Version

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