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CNTN4 contactin 4 [ Apteryx mantelli mantelli ]

Gene ID: 106497361, updated on 13-Mar-2024

Summary

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Gene symbol
CNTN4
Gene description
contactin 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli mantelli (sub-species: mantelli)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx; Apteryx mantelli
Orthologs
human all
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Genomic context

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See CNTN4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current AptMant0 (GCF_001039765.1) Unplaced Scaffold NW_014005481.1 (982251..1197735)

NW_014005481.1Genomic Context describing neighboring genes Neighboring gene contactin 6 Neighboring gene uncharacterized LOC106497363 Neighboring gene interleukin 5 receptor subunit alpha Neighboring gene tRNA nucleotidyl transferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014005481.1 Unplaced Scaffold Reference AptMant0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx australis mantelli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AptMant0

Genomic

  1. NW_014005481.1 Reference AptMant0

    Range
    982251..1197735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013958278.1 → XP_013813732.1  contactin-4 isoform X2

    UniProtKB/TrEMBL
    A0A8B7JRM7
    Conserved Domains (6) summary
    cd04969
    Location:424 → 496
    Ig5_Contactin_like; Fifth Ig domain of contactin
    cd05853
    Location:515 → 599
    Ig6_Contactin-4; Sixth Ig domain of contactin-4
    smart00410
    Location:234 → 313
    IG_like; Immunoglobulin like
    cd00063
    Location:599 → 692
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:318 → 403
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:227 → 315
    Ig; Immunoglobulin domain

  2. XM_013958277.1 → XP_013813731.1  contactin-4 isoform X1

    UniProtKB/TrEMBL
    A0A8B7JRP7
    Conserved Domains (6) summary
    cd04969
    Location:203 → 275
    Ig5_Contactin_like; Fifth Ig domain of contactin
    cd05853
    Location:294 → 378
    Ig6_Contactin-4; Sixth Ig domain of contactin-4
    smart00410
    Location:198 → 275
    IG_like; Immunoglobulin like
    cd00063
    Location:378 → 471
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:97 → 182
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:6 → 94
    Ig; Immunoglobulin domain
Nucleotide Protein
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