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ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 [ Apteryx mantelli mantelli ]

Gene ID: 106494884, updated on 13-Mar-2024

Summary

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Gene symbol
ADAMTS1
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli mantelli (sub-species: mantelli)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx; Apteryx mantelli
Orthologs
human mouse all
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Genomic context

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See ADAMTS1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current AptMant0 (GCF_001039765.1) Unplaced Scaffold NW_014004052.1 (4505932..4523780, complement)

NW_014004052.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106494920 Neighboring gene cysteine and tyrosine rich 1 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 5 Neighboring gene uncharacterized LOC106494923

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014004052.1 Unplaced Scaffold Reference AptMant0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx australis mantelli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AptMant0

Genomic

  1. NW_014004052.1 Reference AptMant0

    Range
    4505932..4523780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013955224.1 → XP_013810678.1  A disintegrin and metalloproteinase with thrombospondin motifs 1

    UniProtKB/TrEMBL
    A0A8B7JL72
    Conserved Domains (5) summary
    smart00209
    Location:355 → 407
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:51 → 257
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:51 → 260
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam05986
    Location:518 → 635
    ADAM_spacer1; ADAM-TS Spacer 1
    cl15456
    Location:270 → 341
    ADAM_CR; ADAM cysteine-rich
Nucleotide Protein
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