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NXF1 nuclear RNA export factor 1 [ Apteryx mantelli mantelli ]

Gene ID: 106491461, updated on 13-Mar-2024

Summary

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Gene symbol
NXF1
Gene description
nuclear RNA export factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli mantelli (sub-species: mantelli)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx; Apteryx mantelli
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current AptMant0 (GCF_001039765.1) Unplaced Scaffold NW_013999786.1 (79598..90235)

NW_013999786.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene transmembrane protein 179B Neighboring gene alpha-actinin-3-like Neighboring gene heterogeneous nuclear ribonucleoprotein U like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013999786.1 Unplaced Scaffold Reference AptMant0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear RNA export factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx australis mantelli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AptMant0

Genomic

  1. NW_013999786.1 Reference AptMant0

    Range
    79598..90235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013951074.1 → XP_013806528.1  nuclear RNA export factor 1

    UniProtKB/TrEMBL
    A0A8B7J9A4
    Conserved Domains (6) summary
    smart00804
    Location:595 → 657
    TAP_C; C-terminal domain of vertebrate Tap protein
    COG4886
    Location:126 → 393
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:247 → 411
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd00780
    Location:421 → 577
    NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
    sd00035
    Location:316 → 358
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam09162
    Location:101 → 183
    Tap-RNA_bind; Tap, RNA-binding
Nucleotide Protein
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