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fpg formamidopyrimidine-DNA glycosylase [ Lactobacillus plantarum WCFS1 ]

Gene ID: 1063357, updated on 16-May-2014
Gene symbol
fpg
Gene description
formamidopyrimidine-DNA glycosylase
Locus tag
lp_1509
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Lactobacillus plantarum WCFS1 (strain: WCFS1, isolate: NCIMB8826)
Lineage
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
Sequence:
NC_004567.2 (1381158..1381982)

NC_004567.2Genomic Context describing neighboring genes Neighboring gene membrane protein Neighboring gene DNA-directed DNA polymerase I Neighboring gene dephospho-CoA kinase Neighboring gene transcription regulator NrdR, ATP cone family

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004567.2 

    Range
    1381158..1381982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004889349.1 formamidopyrimidine-DNA glycosylase [Lactobacillus plantarum WCFS1]

    See proteins identical to YP_004889349.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q88WV4
    Conserved Domains (4) summary
    pfam06831
    Location:133225
    Blast Score: 269
    H2TH; Formamidopyrimidine-DNA glycosylase H2TH domain
    cd08966
    Location:2120
    Blast Score: 472
    EcFpg-like_N; N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases
    PRK01103
    Location:1274
    Blast Score: 1142
    PRK01103; formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
    pfam06827
    Location:245269
    Blast Score: 121
    zf-FPG_IleRS; Zinc finger found in FPG and IleRS

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