These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_006462.4 → NP_006453.1 ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) lacks exon 2, which contains a translation start codon used by variant 2. Instead, it uses an in-frame start codon in exon 1, resulting in isoform 1 that has a distinct N-terminus compared to that of isoform 2.
- Source sequence(s)
-
AB107766, BC014116, BC015219
- Consensus CDS
-
CCDS12998.1
- UniProtKB/Swiss-Prot
-
Q9BYM8
- Related
- ENSP00000254960, OTTHUMP00000029921, ENST00000353660, OTTHUMT00000077460
- Conserved Domains (4) summary
-
- cd01799
Location:15 – 89
Blast Score: 383
- Hoil1_N; Ubiquitin-like domain of HOIL1
- pfam01485
Location:309 – 369
Blast Score: 80
- IBR; IBR domain
- cl02656
Location:155 – 175
Blast Score: 84
- zf-RanBP; Zn-finger in Ran binding protein and others
- cl15348
Location:239 – 283
Blast Score: 78
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
-
NM_031229.2 → NP_112506.2 ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) encodes the longer isoform (2).
- Source sequence(s)
-
BC014116, BC015219
- Consensus CDS
-
CCDS13000.2
- UniProtKB/Swiss-Prot
-
Q9BYM8
- Related
- ENSP00000348632, OTTHUMP00000029922, ENST00000356286, OTTHUMT00000077461
- Conserved Domains (4) summary
-
- cd01799
Location:57 – 131
Blast Score: 382
- Hoil1_N; Ubiquitin-like domain of HOIL1
- pfam01485
Location:351 – 411
Blast Score: 82
- IBR; IBR domain
- cl02656
Location:197 – 217
Blast Score: 85
- zf-RanBP; Zn-finger in Ran binding protein and others
- cl15348
Location:281 – 325
Blast Score: 80
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000020.10 Reference GRCh37.p5 Primary Assembly
- Range
- 388709..411610
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000152.1 Alternate HuRef
- Range
- 340142..362963
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_031227.1: Suppressed sequence
- Description
- NM_031227.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
-
NM_031228.1: Suppressed sequence
- Description
- NM_031228.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.