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Pelo pelota mRNA surveillance and ribosome rescue factor [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 106144696, updated on 13-Mar-2024

Summary

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Gene symbol
Pelo
Gene description
pelota mRNA surveillance and ribosome rescue factor
Locus tag
H1C71_003291
See related
EnsemblRapid:ENSSTOG00015013752
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024407213.1 (205642223..205644180, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936480.1 (14578718..14580690, complement)

NW_024407213.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120885438 Neighboring gene molybdenum cofactor synthesis 2 Neighboring gene integrin subunit alpha 2 Neighboring gene integrin subunit alpha 1 Neighboring gene uncharacterized LOC120885519 Neighboring gene uncharacterized LOC120885518 Neighboring gene uncharacterized LOC110597595 Neighboring gene ISL LIM homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nonfunctional rRNA decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, no-go decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, non-stop decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein pelota homolog
Names
pelota homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024407213.1 Reference HiC_Itri_2 Primary Assembly

    Range
    205642223..205644180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013356085.3 → XP_013211539.1  protein pelota homolog

    UniProtKB/TrEMBL
    I3MXN9
    Related
    ENSSTOP00015016820.1, ENSSTOT00015018438.1
    Conserved Domains (1) summary
    COG1537
    Location:1 → 371
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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