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Nectin4 nectin cell adhesion molecule 4 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105996469, updated on 13-Mar-2024

Summary

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Gene symbol
Nectin4
Gene description
nectin cell adhesion molecule 4
See related
Ensembl:ENSDORG00000004586
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267347.1 (925845..944553)

NW_012267347.1Genomic Context describing neighboring genes Neighboring gene nitrilase 1 Neighboring gene prefoldin subunit 2 Neighboring gene kelch domain containing 9 Neighboring gene Rho GTPase activating protein 30 Neighboring gene upstream transcription factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267347.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in symbiont entry into host cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nectin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267347.1 Reference Dord_2.0

    Range
    925845..944553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013030552.1 → XP_012886006.1  nectin-4 isoform X1

    UniProtKB/TrEMBL
    A0A1S3GB04
    Related
    ENSDORP00000026295.1, ENSDORT00000023512.1
    Conserved Domains (3) summary
    cd00096
    Location:265 → 328
    Ig; Immunoglobulin domain
    cd07704
    Location:148 → 241
    IgC1_2_Nectin-3-4_like; Second immunoglobulin (Ig) domain of nectin-3 and nectin-4 (poliovirus receptor related protein 4), and similar domains; member of the C1-set of Ig superfamily (IgSF) domains
    cl11960
    Location:37 → 145
    Ig; Immunoglobulin domain

  2. XM_013030553.1 → XP_012886007.1  nectin-4 isoform X2

    UniProtKB/TrEMBL
    A0A1S3GDB5
    Related
    ENSDORP00000004295.2, ENSDORT00000004586.2
    Conserved Domains (3) summary
    cd00096
    Location:265 → 328
    Ig; Immunoglobulin domain
    cd07704
    Location:148 → 241
    IgC1_2_Nectin-3-4_like; Second immunoglobulin (Ig) domain of nectin-3 and nectin-4 (poliovirus receptor related protein 4), and similar domains; member of the C1-set of Ig superfamily (IgSF) domains
    cl11960
    Location:37 → 145
    Ig; Immunoglobulin domain
Nucleotide Protein
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