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Amfr autocrine motility factor receptor [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105994458, updated on 13-Mar-2024

Summary

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Gene symbol
Amfr
Gene description
autocrine motility factor receptor
See related
Ensembl:ENSDORG00000005127
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267322.1 (7432514..7458644, complement)

NW_012267322.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105994439 Neighboring gene G protein subunit alpha o1 Neighboring gene nudix hydrolase 21 Neighboring gene 2-oxoglutarate and iron dependent oxygenase domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267322.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase AMFR

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267322.1 Reference Dord_2.0

    Range
    7432514..7458644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013027974.1 → XP_012883428.1  E3 ubiquitin-protein ligase AMFR

    UniProtKB/TrEMBL
    A0A1S3G3P0
    Related
    ENSDORP00000017060.1, ENSDORT00000023690.1
    Conserved Domains (3) summary
    COG5243
    Location:2 → 287
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    cd14421
    Location:363 → 403
    CUE_AMFR; CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins
    pfam13639
    Location:244 → 284
    zf-RING_2; Ring finger domain
Nucleotide Protein
Heading Accession and Version

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