U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Scn9a sodium voltage-gated channel alpha subunit 9 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105993911, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Scn9a
Gene description
sodium voltage-gated channel alpha subunit 9
See related
Ensembl:ENSDORG00000014776
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267221.1 (17417586..17496449, complement)

NW_012267221.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 21B Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene sodium voltage-gated channel alpha subunit 7 Neighboring gene xin actin binding repeat containing 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_012267221.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated sodium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane depolarization during action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuronal action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated sodium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sodium channel protein type 9 subunit alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267221.1 Reference Dord_2.0

    Range
    17417586..17496449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013027294.1 → XP_012882748.1  sodium channel protein type 9 subunit alpha

    UniProtKB/TrEMBL
    A0A1S3G1R5
    Related
    ENSDORP00000013510.2, ENSDORT00000014365.2
    Conserved Domains (5) summary
    cd13433
    Location:1462 → 1514
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1213 → 1470
    Ion_trans; Ion transport protein
    pfam06512
    Location:986 → 1191
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:492 → 611
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1784 → 1841
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.