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Npnt nephronectin [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105991211, updated on 13-Mar-2024

Summary

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Gene symbol
Npnt
Gene description
nephronectin
See related
Ensembl:ENSDORG00000009968
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267286.1 (8461065..8520929, complement)

NW_012267286.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM13-like Neighboring gene aminoacyl tRNA synthetase complex interacting multifunctional protein 1 Neighboring gene TBC1 domain containing kinase Neighboring gene glutathione S-transferase C-terminal domain containing Neighboring gene integrator complex subunit 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267286.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephronectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267286.1 Reference Dord_2.0

    Range
    8461065..8520929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013023801.1 → XP_012879255.1  nephronectin isoform X2

    UniProtKB/TrEMBL
    A0A1S3FSB7
    Conserved Domains (4) summary
    cd06263
    Location:318 → 347
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam12662
    Location:46 → 68
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:114 → 149
    EGF_3; EGF domain
    cl00057
    Location:60 → 100
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_013023799.1 → XP_012879253.1  nephronectin isoform X1

    See identical proteins and their annotated locations for XP_012879253.1

    UniProtKB/TrEMBL
    A0A1S3FTA2
    Related
    ENSDORP00000021082.1, ENSDORT00000028218.1
    Conserved Domains (5) summary
    cd06263
    Location:318 → 457
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam00629
    Location:318 → 459
    MAM; MAM domain, meprin/A5/mu
    pfam12662
    Location:46 → 68
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:114 → 149
    EGF_3; EGF domain
    cl00057
    Location:60 → 100
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_013023800.1 → XP_012879254.1  nephronectin isoform X1

    See identical proteins and their annotated locations for XP_012879254.1

    UniProtKB/TrEMBL
    A0A1S3FTA2
    Conserved Domains (5) summary
    cd06263
    Location:318 → 457
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam00629
    Location:318 → 459
    MAM; MAM domain, meprin/A5/mu
    pfam12662
    Location:46 → 68
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:114 → 149
    EGF_3; EGF domain
    cl00057
    Location:60 → 100
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  4. XM_013023798.1 → XP_012879252.1  nephronectin isoform X1

    See identical proteins and their annotated locations for XP_012879252.1

    UniProtKB/TrEMBL
    A0A1S3FTA2
    Related
    ENSDORP00000024634.1, ENSDORT00000032506.1
    Conserved Domains (5) summary
    cd06263
    Location:318 → 457
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam00629
    Location:318 → 459
    MAM; MAM domain, meprin/A5/mu
    pfam12662
    Location:46 → 68
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:114 → 149
    EGF_3; EGF domain
    cl00057
    Location:60 → 100
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  5. XM_013023802.1 → XP_012879256.1  nephronectin isoform X3

    UniProtKB/TrEMBL
    A0A1S3FRS1
    Conserved Domains (4) summary
    cd06263
    Location:318 → 345
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    pfam12662
    Location:46 → 68
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:114 → 149
    EGF_3; EGF domain
    cl00057
    Location:60 → 100
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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