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Fubp1 far upstream element binding protein 1 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105987116, updated on 13-Mar-2024

Summary

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Gene symbol
Fubp1
Gene description
far upstream element binding protein 1
See related
Ensembl:ENSDORG00000016534
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267255.1 (339506..370843, complement)

NW_012267255.1Genomic Context describing neighboring genes Neighboring gene mitoguardin 1 Neighboring gene nexilin F-actin binding protein Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene GIPC PDZ domain containing family member 2 Neighboring gene G2/mitotic-specific cyclin-B1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267255.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
far upstream element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267255.1 Reference Dord_2.0

    Range
    339506..370843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013018280.1 → XP_012873734.1  far upstream element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A1S3FCF7
    Conserved Domains (5) summary
    pfam09005
    Location:602 → 622
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:98 → 172
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:186 → 255
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:276 → 343
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:376 → 447
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  2. XM_013018276.1 → XP_012873730.1  far upstream element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1S3FBV1
    Conserved Domains (5) summary
    pfam09005
    Location:601 → 621
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:97 → 171
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:185 → 254
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:275 → 342
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:375 → 446
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  3. XM_013018275.1 → XP_012873729.1  far upstream element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1S3FCF2
    Conserved Domains (5) summary
    pfam09005
    Location:604 → 624
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:97 → 171
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:185 → 254
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:275 → 342
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:375 → 446
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  4. XM_013018278.1 → XP_012873732.1  far upstream element-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A1S3FCN8
    Conserved Domains (5) summary
    pfam09005
    Location:604 → 624
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:97 → 171
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:185 → 254
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:275 → 342
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:375 → 446
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  5. XM_013018277.1 → XP_012873731.1  far upstream element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A1S3FB18
    Related
    ENSDORP00000026158.1, ENSDORT00000034644.1
    Conserved Domains (2) summary
    cd00105
    Location:102 → 164
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:602 → 622
    DUF1897; Domain of unknown function (DUF1897)

  6. XM_013018279.1 → XP_012873733.1  far upstream element-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A1S3FAQ1
    Related
    ENSDORP00000015558.2, ENSDORT00000016535.2
    Conserved Domains (2) summary
    cd00105
    Location:102 → 164
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:605 → 625
    DUF1897; Domain of unknown function (DUF1897)

  7. XM_013018282.1 → XP_012873736.1  far upstream element-binding protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A1S3FB21
    Conserved Domains (2) summary
    cd00105
    Location:123 → 185
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam09005
    Location:623 → 643
    DUF1897; Domain of unknown function (DUF1897)
Nucleotide Protein
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