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Lrig1 leucine rich repeats and immunoglobulin like domains 1 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105981277, updated on 13-Mar-2024

Summary

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Gene symbol
Lrig1
Gene description
leucine rich repeats and immunoglobulin like domains 1
See related
Ensembl:ENSDORG00000003508
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267228.1 (16757081..16886635)

NW_012267228.1Genomic Context describing neighboring genes Neighboring gene succinate-CoA ligase GDP-forming subunit beta Neighboring gene kelch repeat and BTB domain containing 8 Neighboring gene solute carrier family 25 member 26 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 1 Neighboring gene uncharacterized LOC105981223

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267228.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeats and immunoglobulin-like domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267228.1 Reference Dord_2.0

    Range
    16757081..16886635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013010367.1 → XP_012865821.1  leucine-rich repeats and immunoglobulin-like domains protein 1

    Related
    ENSDORP00000019331.1, ENSDORT00000032468.1
    Conserved Domains (10) summary
    cd05763
    Location:648 → 722
    Ig_1; Subgroup of the immunoglobulin (Ig) superfamily
    smart00408
    Location:739 → 802
    IGc2; Immunoglobulin C-2 Type
    smart00082
    Location:474 → 522
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:163 → 474
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam07679
    Location:631 → 721
    I-set; Immunoglobulin I-set domain
    sd00031
    Location:102 → 125
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:173 → 196
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00047
    Location:530 → 620
    ig; Immunoglobulin domain
    pfam12799
    Location:103 → 142
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:340 → 399
    LRR_8; Leucine rich repeat
Nucleotide Protein
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