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LOC105979742 zinc finger protein 239 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 105979742, updated on 16-Nov-2023

Summary

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Gene symbol
LOC105979742
Gene description
zinc finger protein 239
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Also known as
ZNF239
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022111362.1 (1964376..1989351)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558800.1 (3171356..3172555, complement)

NW_022111362.1Genomic Context describing neighboring genes Neighboring gene nucleolin-like Neighboring gene zinc finger protein 32 Neighboring gene fatty acid-binding protein 5-like Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger protein 239

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022111362.1 Reference ASM31398v2 Primary Assembly

    Range
    1964376..1989351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030888369.2 → XP_030744229.1  LOW QUALITY PROTEIN: zinc finger protein 239

    Conserved Domains (2) summary
    COG5048
    Location:101 → 269
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:152 → 172
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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