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tcf3b transcription factor 3b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105938952, updated on 13-Mar-2024

Summary

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Gene symbol
tcf3b
Gene description
transcription factor 3b
See related
Ensembl:ENSFHEG00000012518
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
tcf3
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
21
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 9 NC_046369.1 (26273856..26312867)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234525.1 (715380..754787, complement)

Chromosome 9 - NC_046369.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 2a Neighboring gene zinc finger and BTB domain containing 7a Neighboring gene cytochrome b-c1 complex subunit 10-like Neighboring gene methyl-CpG binding domain protein 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 3b
Names
Transcription factor E2-alpha
transcription factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046369.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    26273856..26312867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012880912.3 → XP_012736366.2  transcription factor 3b isoform X5

    UniProtKB/TrEMBL
    A0A146ZKI7
    Conserved Domains (1) summary
    cd18945
    Location:518 → 602
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  2. XM_012880911.3 → XP_012736365.2  transcription factor 3b isoform X4

    UniProtKB/TrEMBL
    A0A146ZKI7
    Conserved Domains (1) summary
    cd18945
    Location:518 → 602
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  3. XM_021307745.2 → XP_021163420.2  transcription factor 3b isoform X1

    UniProtKB/TrEMBL
    A0A146ZKI7
    Conserved Domains (1) summary
    cd18945
    Location:519 → 603
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  4. XM_012880909.3 → XP_012736363.2  transcription factor 3b isoform X2

    UniProtKB/TrEMBL
    A0A146ZKI7
    Conserved Domains (1) summary
    cd18945
    Location:518 → 602
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  5. XM_012880910.3 → XP_012736364.2  transcription factor 3b isoform X3

    UniProtKB/TrEMBL
    A0A3Q2QNL6
    Conserved Domains (1) summary
    cd18945
    Location:518 → 602
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  6. XM_021307748.2 → XP_021163423.2  transcription factor 3b isoform X6

    UniProtKB/TrEMBL
    A0A146ZKI7
    Conserved Domains (1) summary
    cd18945
    Location:494 → 578
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins
Nucleotide Protein
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