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asb5a ankyrin repeat and SOCS box containing 5a [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105936214, updated on 13-Mar-2024

Summary

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Gene symbol
asb5a
Gene description
ankyrin repeat and SOCS box containing 5a
See related
Ensembl:ENSFHEG00000007816
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
asb5
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
8
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 23 NC_046383.1 (14037957..14046615)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234447.1 (449062..457345, complement)

Chromosome 23 - NC_046383.1Genomic Context describing neighboring genes Neighboring gene teneurin-3 Neighboring gene tryptophan 2,3-dioxygenase a Neighboring gene cathepsin O Neighboring gene uncharacterized LOC118557294 Neighboring gene glycoprotein M6Aa Neighboring gene info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SOCS box protein 5
Names
Ankyrin repeat and SOCS box protein 5
ankyrin repeat and SOCS box containing 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046383.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    14037957..14046615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021323767.2 → XP_021179442.2  ankyrin repeat and SOCS box protein 5

    UniProtKB/TrEMBL
    A0A3Q2P3V0
    Conserved Domains (3) summary
    PHA02876
    Location:46 → 276
    PHA02876; ankyrin repeat protein; Provisional
    sd00045
    Location:74 → 103
    ANK; ANK repeat [structural motif]
    cl02533
    Location:291 → 332
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
Nucleotide Protein
Heading Accession and Version

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