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ccbe1 collagen and calcium binding EGF domains 1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105930644, updated on 13-Mar-2024

Summary

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Gene symbol
ccbe1
Gene description
collagen and calcium binding EGF domains 1
See related
Ensembl:ENSFHEG00000004764
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 8 NC_046368.1 (19373760..19431511, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234328.1 (126808..187274)

Chromosome 8 - NC_046368.1Genomic Context describing neighboring genes Neighboring gene complexin 4a Neighboring gene lectin, mannose-binding, 1 Neighboring gene parkin coregulated gene protein homolog Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen and calcium-binding EGF domain-containing protein 1
Names
Collagen and calcium-binding EGF domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046368.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    19373760..19431511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012868944.3 → XP_012724398.2  collagen and calcium-binding EGF domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2NWS3
    Conserved Domains (2) summary
    smart00179
    Location:125 → 166
    EGF_CA; Calcium-binding EGF-like domain
    pfam01391
    Location:269 → 301
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_012868943.3 → XP_012724397.2  collagen and calcium-binding EGF domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2NWS3
    Conserved Domains (2) summary
    smart00179
    Location:125 → 166
    EGF_CA; Calcium-binding EGF-like domain
    pfam01391
    Location:270 → 302
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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