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zgc:154046 choline/carnitine O-acyltransferase [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105928788, updated on 13-Mar-2024

Summary

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Gene symbol
zgc:154046
Gene description
choline/carnitine O-acyltransferase
See related
Ensembl:ENSFHEG00000001481
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
crat
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 12 NC_046372.1 (36637982..36648731, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234300.1 (1160615..1185456, complement)

Chromosome 12 - NC_046372.1Genomic Context describing neighboring genes Neighboring gene neuronal calcium sensor 1b Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 13 Neighboring gene immediate early response gene 5-like protein Neighboring gene ankyrin repeat and SOCS box containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process, CoA-linked IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-acetyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046372.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    36637982..36648731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012866270.3 → XP_012721724.2  carnitine O-acetyltransferase

    UniProtKB/TrEMBL
    A0A3Q2NP52
    Conserved Domains (1) summary
    pfam00755
    Location:38 → 617
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
Nucleotide Protein
Heading Accession and Version

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