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col12a1a collagen, type XII, alpha 1a [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105925948, updated on 13-Mar-2024

Summary

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Gene symbol
col12a1a
Gene description
collagen, type XII, alpha 1a
See related
Ensembl:ENSFHEG00000008851
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
col12a1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
67
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 19 NC_046379.1 (14114210..14183456, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234262.1 (854064..923142, complement)

Chromosome 19 - NC_046379.1Genomic Context describing neighboring genes Neighboring gene cytospin-A Neighboring gene CD109 antigen Neighboring gene filamin-A-interacting protein 1 Neighboring gene transmembrane protein 30Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XII) chain
Names
Collagen alpha-1(XII) chain
collagen type XII alpha 1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046379.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    14114210..14183456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012862067.3 → XP_012717521.2  collagen alpha-1(XII) chain isoform X2

    UniProtKB/TrEMBL
    A0A3Q2T1R2
    Conserved Domains (7) summary
    smart00060
    Location:1837 → 1914
    FN3; Fibronectin type 3 domain
    cd00063
    Location:906 → 992
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1198 → 1361
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:2021 → 2099
    fn3; Fibronectin type III domain
    pfam01391
    Location:2837 → 2893
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:2317 → 2481
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:2515 → 2709
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_012862064.3 → XP_012717518.2  collagen alpha-1(XII) chain isoform X1

    UniProtKB/TrEMBL
    A0A3Q2T1R2
    Conserved Domains (7) summary
    smart00060
    Location:1845 → 1922
    FN3; Fibronectin type 3 domain
    cd00063
    Location:906 → 992
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1198 → 1361
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:2029 → 2107
    fn3; Fibronectin type III domain
    pfam01391
    Location:2845 → 2901
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:2325 → 2489
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:2523 → 2717
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  3. XM_012862069.3 → XP_012717523.2  collagen alpha-1(XII) chain isoform X4

    Conserved Domains (7) summary
    smart00060
    Location:680 → 757
    FN3; Fibronectin type 3 domain
    cd00063
    Location:955 → 1031
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:33 → 196
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:864 → 942
    fn3; Fibronectin type III domain
    pfam01391
    Location:1680 → 1736
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:1160 → 1324
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:1358 → 1552
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  4. XM_012862068.3 → XP_012717522.2  collagen alpha-1(XII) chain isoform X3

    UniProtKB/TrEMBL
    A0A3Q2T1R2
    Conserved Domains (7) summary
    smart00060
    Location:1845 → 1922
    FN3; Fibronectin type 3 domain
    cd00063
    Location:906 → 992
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:1198 → 1361
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:2029 → 2107
    fn3; Fibronectin type III domain
    pfam01391
    Location:2845 → 2901
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:2325 → 2489
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:2523 → 2717
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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