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itgb5 integrin, beta 5 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105924071, updated on 13-Mar-2024

Summary

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Gene symbol
itgb5
Gene description
integrin, beta 5
See related
Ensembl:ENSFHEG00000013494
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 7 NC_046367.1 (6174877..6256782)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224430.1 (749864..820589, complement)

Chromosome 7 - NC_046367.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 44 Neighboring gene uncharacterized LOC118563668 Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene tumor necrosis factor-inducible gene 6 protein-like Neighboring gene integrin beta-5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-5
Names
integrin subunit beta 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046367.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    6174877..6256782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036138812.1 → XP_035994705.1  integrin beta-5

    UniProtKB/TrEMBL
    A0A3Q2PI91
    Conserved Domains (4) summary
    smart00187
    Location:34 → 463
    INB; Integrin beta subunits (N-terminal portion of extracellular region)
    pfam07965
    Location:635 → 718
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:743 → 781
    Integrin_b_cyt; Integrin beta cytoplasmic domain
    pfam18372
    Location:465 → 493
    I-EGF_1; Integrin beta epidermal growth factor like domain 1
Nucleotide Protein
Heading Accession and Version

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