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atp13a3 ATPase 13A3 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105913209, updated on 13-Mar-2024

Summary

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Gene symbol
atp13a3
Gene description
ATPase 13A3
See related
EnsemblRapid:ENSCHAG00020014344
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
34
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 10 NC_045161.1 (4860887..4905246)

Chromosome 10 - NC_045161.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116222133 Neighboring gene chromosome 10 C1orf210 homolog Neighboring gene transmembrane protein 44 Neighboring gene interleukin 23 receptor Neighboring gene interleukin 12 receptor, beta 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045161.1 Chromosome 10 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type ion transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyamine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in polyamine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyamine-transporting ATPase 13A3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045161.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    4860887..4905246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031575098.2 → XP_031430958.1  polyamine-transporting ATPase 13A3

    UniProtKB/TrEMBL
    A0A6P8FSC2
    Related
    ENSCHAP00020033112.1, ENSCHAT00020035476.1
    Conserved Domains (1) summary
    TIGR01657
    Location:12 → 1148
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
Nucleotide Protein
Heading Accession and Version

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