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LOC105911670 protocadherin-20 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105911670, updated on 13-Mar-2024

Summary

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Gene symbol
LOC105911670
Gene description
protocadherin-20
See related
EnsemblRapid:ENSCHAG00020025900
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 21
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 21 NC_045172.1 (11868835..11872934)

Chromosome 21 - NC_045172.1Genomic Context describing neighboring genes Neighboring gene protocadherin-9 Neighboring gene uncharacterized LOC122128593 Neighboring gene C3a anaphylatoxin chemotactic receptor-like Neighboring gene tudor domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045172.1 Chromosome 21 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045172.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    11868835..11872934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031558979.2 → XP_031414839.1  protocadherin-20

    UniProtKB/TrEMBL
    A0A6P8ES30
    Related
    ENSCHAP00020059254.1, ENSCHAT00020063874.1
    Conserved Domains (2) summary
    cd11304
    Location:479 → 574
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:37 → 122
    Cadherin_2; Cadherin-like
Nucleotide Protein
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