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lrrc1 leucine rich repeat containing 1 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105911609, updated on 13-Mar-2024

Summary

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Gene symbol
lrrc1
Gene description
leucine rich repeat containing 1
See related
EnsemblRapid:ENSCHAG00020013530
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 13 NC_045164.1 (10792118..10821897)

Chromosome 13 - NC_045164.1Genomic Context describing neighboring genes Neighboring gene kelch-like family member 31 Neighboring gene elongin A, like Neighboring gene protein scribble homolog Neighboring gene muscular LMNA-interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045164.1 Chromosome 13 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter receptor transport postsynaptic membrane to endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport, endosome to postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045164.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    10792118..10821897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012840432.3 → XP_012695886.2  leucine-rich repeat-containing protein 1

    UniProtKB/TrEMBL
    A0A6P3WDH4
    Related
    ENSCHAP00020029668.1, ENSCHAT00020031924.1
    Conserved Domains (3) summary
    PRK15370
    Location:26 → 285
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    COG4886
    Location:189 → 391
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:38 → 60
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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