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tmcc1a transmembrane and coiled-coil domain family 1a [ Clupea harengus (Atlantic herring) ]

Gene ID: 105910043, updated on 13-Mar-2024

Summary

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Gene symbol
tmcc1a
Gene description
transmembrane and coiled-coil domain family 1a
See related
EnsemblRapid:ENSCHAG00020020748
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
tmcc1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 1 NC_045152.1 (27255977..27281754)

Chromosome 1 - NC_045152.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 17-like Neighboring gene thyrotropin-releasing hormone Neighboring gene plexin D1 Neighboring gene rhodopsin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045152.1 Chromosome 1 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and coiled-coil domains protein 1
Names
transmembrane and coiled-coil domain family 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045152.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    27255977..27281754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031574212.2 → XP_031430072.1  transmembrane and coiled-coil domains protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P8G3I9
    Related
    ENSCHAP00020047222.1, ENSCHAT00020050650.1
    Conserved Domains (1) summary
    pfam10267
    Location:116 → 524
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  2. XM_031574205.2 → XP_031430065.1  transmembrane and coiled-coil domains protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P8G3K2
    Related
    ENSCHAP00020047216.1, ENSCHAT00020050644.1
    Conserved Domains (1) summary
    pfam10267
    Location:42 → 450
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  3. XM_031574193.2 → XP_031430053.1  transmembrane and coiled-coil domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P8FPG3
    Related
    ENSCHAP00020047211.1, ENSCHAT00020050639.1
    Conserved Domains (1) summary
    pfam10267
    Location:54 → 462
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

  4. XM_012838721.3 → XP_012694175.1  transmembrane and coiled-coil domains protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P3WB72
    Related
    ENSCHAP00020047196.1, ENSCHAT00020050624.1
    Conserved Domains (1) summary
    pfam10267
    Location:42 → 450
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein
Nucleotide Protein
Heading Accession and Version

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