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dpf1 double PHD fingers 1 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105909267, updated on 13-Mar-2024

Summary

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Gene symbol
dpf1
Gene description
double PHD fingers 1
See related
EnsemblRapid:ENSCHAG00020014809
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 9 NC_045160.1 (3138161..3180775, complement)

Chromosome 9 - NC_045160.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene endonuclease domain-containing 1 protein-like Neighboring gene zinc finger FYVE domain-containing protein 1 Neighboring gene NUMB like endocytic adaptor protein Neighboring gene coenzyme Q8B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045160.1 Chromosome 9 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein neuro-d4
Names
D4, zinc and double PHD fingers family 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045160.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    3138161..3180775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012837881.2 → XP_012693335.2  zinc finger protein neuro-d4 isoform X3

    UniProtKB/TrEMBL
    A0A6P3W9Y9
    Related
    ENSCHAP00020033130.1, ENSCHAT00020035494.1
    Conserved Domains (5) summary
    COG5189
    Location:156 → 184
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:162 → 181
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd15530
    Location:275 → 320
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:217 → 274
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:1 → 48
    Requiem_N; N-terminal domain of DPF2/REQ

  2. XM_031573086.2 → XP_031428946.1  zinc finger protein neuro-d4 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FZR3
    Conserved Domains (5) summary
    COG5189
    Location:228 → 256
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:234 → 253
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd15530
    Location:347 → 390
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:289 → 346
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:49 → 120
    Requiem_N; N-terminal domain of DPF2/REQ

  3. XM_031573085.2 → XP_031428945.1  zinc finger protein neuro-d4 isoform X1

    UniProtKB/TrEMBL
    A0A6P8FZZ9
    Related
    ENSCHAP00020033125.1, ENSCHAT00020035489.1
    Conserved Domains (5) summary
    COG5189
    Location:228 → 256
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:234 → 253
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd15530
    Location:347 → 392
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15690
    Location:289 → 346
    PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
    pfam14051
    Location:49 → 120
    Requiem_N; N-terminal domain of DPF2/REQ
Nucleotide Protein
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