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tceanc2 transcription elongation factor A (SII) N-terminal and central domain containing 2 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105908519, updated on 13-Mar-2024

Summary

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Gene symbol
tceanc2
Gene description
transcription elongation factor A (SII) N-terminal and central domain containing 2
See related
EnsemblRapid:ENSCHAG00020017726
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 22 NC_045173.1 (8790258..8791977)

Chromosome 22 - NC_045173.1Genomic Context describing neighboring genes Neighboring gene low-density lipoprotein receptor class A domain-containing protein 1 Neighboring gene transmembrane protein 59 Neighboring gene CUB domain containing protein 2 Neighboring gene mitochondrial ribosomal protein L37 Neighboring gene single stranded DNA binding protein 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045173.1 Chromosome 22 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor A N-terminal and central domain-containing protein 2
Names
transcription elongation factor A N-terminal and central domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045173.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    8790258..8791977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012837049.3 → XP_012692503.2  transcription elongation factor A N-terminal and central domain-containing protein 2

    UniProtKB/TrEMBL
    A0A6P3W8S9
    Related
    ENSCHAP00020040129.1, ENSCHAT00020043012.1
    Conserved Domains (2) summary
    cd00183
    Location:38 → 111
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    TIGR01385
    Location:39 → 191
    TFSII; transcription elongation factor S-II
Nucleotide Protein
Heading Accession and Version

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