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bcar1 BCAR1 scaffold protein, Cas family member [ Clupea harengus (Atlantic herring) ]

Gene ID: 105904514, updated on 11-Apr-2024

Summary

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Gene symbol
bcar1
Gene description
BCAR1 scaffold protein, Cas family member
See related
EnsemblRapid:ENSCHAG00020027771
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 3 NC_045154.1 (5899447..5982716, complement)

Chromosome 3 - NC_045154.1Genomic Context describing neighboring genes Neighboring gene nedd4 binding protein 1 Neighboring gene nudix hydrolase 21 Neighboring gene neuropeptides B/W receptor type 1-like Neighboring gene craniofacial development protein 1 Neighboring gene transmembrane protein 170A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045154.1 Chromosome 3 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
breast cancer anti-estrogen resistance protein 1
Names
BCAR1, Cas family scaffold protein
BCAR1, Cas family scaffolding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045154.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    5899447..5982716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042707496.1 → XP_042563430.1  breast cancer anti-estrogen resistance protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M1KLH5
    Conserved Domains (3) summary
    cd11552
    Location:516 → 673
    Serine_rich_BCAR1; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein, Breast Cancer Anti-estrogen Resistance 1; a protein interaction module
    cd12001
    Location:4 → 70
    SH3_BCAR1; Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1
    cl13463
    Location:809 → 860
    FAT-like_CAS_C; C-terminal FAT-like Four helix bundle domain, also called DUF3513, of CAS (Crk-Associated Substrate) scaffolding proteins; a protein interaction module

  2. XM_031564375.2 → XP_031420235.1  breast cancer anti-estrogen resistance protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P8F8X7
    Related
    ENSCHAP00020063008.1, ENSCHAT00020068360.1
    Conserved Domains (3) summary
    cd11552
    Location:516 → 673
    Serine_rich_BCAR1; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein, Breast Cancer Anti-estrogen Resistance 1; a protein interaction module
    cd12001
    Location:5 → 70
    SH3_BCAR1; Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1
    pfam12026
    Location:731 → 940
    DUF3513; Domain of unknown function (DUF3513)

  3. XM_012832413.3 → XP_012687867.2  breast cancer anti-estrogen resistance protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3W2R7
    Related
    ENSCHAP00020063002.1, ENSCHAT00020068354.1
    Conserved Domains (3) summary
    cd11552
    Location:516 → 673
    Serine_rich_BCAR1; Serine rich Four helix bundle domain of CAS (Crk-Associated Substrate) scaffolding protein, Breast Cancer Anti-estrogen Resistance 1; a protein interaction module
    cd12001
    Location:4 → 70
    SH3_BCAR1; Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1
    pfam12026
    Location:731 → 940
    DUF3513; Domain of unknown function (DUF3513)
Nucleotide Protein
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