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twist1a twist family bHLH transcription factor 1a [ Clupea harengus (Atlantic herring) ]

Gene ID: 105903679, updated on 13-Mar-2024

Summary

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Gene symbol
twist1a
Gene description
twist family bHLH transcription factor 1a
See related
EnsemblRapid:ENSCHAG00020012606
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
twist1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 19 NC_045170.1 (19755972..19757838, complement)

Chromosome 19 - NC_045170.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 13 Neighboring gene histone deacetylase 9-B Neighboring gene fer3-like protein Neighboring gene RNA polymerase I subunit F

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045170.1 Chromosome 19 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
twist-related protein 1a
Names
twist family bHLH transcription factor 1
twist-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045170.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    19755972..19757838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012831459.2 → XP_012686913.1  twist-related protein 1a

    UniProtKB/TrEMBL
    A0A6P3W1E3
    Related
    ENSCHAP00020027341.1, ENSCHAT00020029474.1
    Conserved Domains (1) summary
    cd11412
    Location:63 → 139
    bHLH_TS_TWIST1; basic helix-loop-helix (bHLH) domain found in twist-related protein 1 (TWIST1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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