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fam50a family with sequence similarity 50 member A [ Clupea harengus (Atlantic herring) ]

Gene ID: 105903262, updated on 13-Mar-2024

Summary

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Gene symbol
fam50a
Gene description
family with sequence similarity 50 member A
See related
EnsemblRapid:ENSCHAG00020032289
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 4 NC_045155.1 (4425191..4432409)

Chromosome 4 - NC_045155.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein polypeptide G Neighboring gene pyridoxal phosphate binding protein Neighboring gene transmembrane p24 trafficking protein 4 Neighboring gene interleukin-17 receptor D Neighboring gene seryl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045155.1 Chromosome 4 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAM50A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045155.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    4425191..4432409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012830978.3 → XP_012686432.1  protein FAM50A

    UniProtKB/TrEMBL
    A0A6P3W0U1
    Related
    ENSCHAP00020071172.1, ENSCHAT00020078719.1
    Conserved Domains (1) summary
    pfam04921
    Location:152 → 340
    XAP5; circadian clock regulator
Nucleotide Protein
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